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               PA3505               
Key to diagram


View in GBrowse: View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names
Locus tag PA3505 (View 3 updates) Submit an Update GenBank Identifier (GI) 15598701 (Precomputed BLAST results at BLINK )
Genomic location 3922073 - 3921270 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
 
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA03505
Systomonas PA3505
RefSeq NP_252195.1
GI 15598701
KEGG PA3505
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Operons/Regulons
Type operon
Genes
GeneProduct
PA3504 probable aldehyde dehydrogenase
PA3505 hypothetical protein
PA3506 probable decarboxylase
PA3507 probable short-chain dehydrogenase
PA3508 probable transcriptional regulator
PA3509 probable hydrolase
PA3510 hypothetical protein
PA3511 probable short-chain dehydrogenase
PA3512 probable permease of ABC transporter
PA3513 hypothetical protein
PA3514 probable ATP-binding component of ABC transporter
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-13822
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Hypothetical, unclassified, unknown
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Nicotinate and nicotinamide metabolism KEGG pae00760 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 48% similar to a conserved protein of [Methanobacterium thermoautotrophicum]
Most Similar Human Homolog
ENSP00000373860, Percent Identity: 29.96%, E-Value: 1e-06, Ensembl Release: 56.
Description: Putative L-aspartate dehydrogenase
Structure Features
Structure Features Explanation of Structure Features Field 1-2 predicted transmembrane domains
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF03447 NAD_binding_3, Homoserine dehydrogenase, NAD binding domain. 8 118 2e-19 23.0
PF01958 DUF108, Domain of unknown function DUF108. 167 256 2e-32 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region CAGCCCCCGCGCCGGCGTCCACGCCCTCGGCGGTGGCATCGGCCAGGGCCTGGCCATGGGCATCGGCGCGGCGGTCGGCGCGGCGGAAACCGCGCCTGGG CGCAAGACCTTCGTGCTCGCCGGCGACGGCGGCTTCATCCTCAACCTGGGCGAACTGGCCACCGCCGTGCAGGAGCGGGCCGACATGCTCATCGTGCTGA TGAACGACCAGGGCTACGGGGTGATCAAGAACATCCAGGACGCCGCCTACGGTGGCCGCCGCTGCTACGTCGACCTGCACACCCCGGACTATGCCCAACT GTCGGCTTCCCTCGGCCTGCGTCATGCCAAGGTCAGCGATCTGAAGGATTTCAGCGCCGTGCTCGATGGCGCCCTGGCCGAGCCAGGTCCCTTCCTGCTG GAGGTGGACATGCTCGCGGTGGGCAGCTTCAAGAGCATTTTCGCCGGCCCGCCGACCAACGATGCCAAGACCGACAAGGCCACCGCTTGAGGCTCTCGCC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGCTGAATATCGTCATGATCGGCTGCGGCGCCATCGGCGCCGGCGTCCTGGAACTGTTGGAGAACGATCCGCAACTGAGGGTCGATGCGGTGATCGTTC CTCGCGACTCCGAGACCCAGGTCCGCCATCGCCTGGCCAGCCTGCGCCGGCCGCCGCGGGTACTCAGCGCGCTGCCGGCCGGAGAGCGCCCCGATCTTCT GGTGGAGTGCGCCGGGCACCGCGCCATCGAGCAGCACGTGCTGCCGGCGCTGGCCCAAGGCATTCCCTGCCTGGTGGTCTCGGTGGGCGCGCTGTCCGAG CCGGGCCTGGTGGAGCGCCTGGAAGCCGCGGCGCAGGCCGGAGGCAGCCGCATCGAGCTGCTGCCCGGCGCCATCGGCGCCATCGATGCGCTGTCGGCGG CCAGGGTCGGTGGCCTCGAATCGGTGCGCTACACCGGGCGCAAGCCGGCGAGCGCCTGGCTGGGCACGCCAGGCGAGACGGTCTGCGACCTGCAGCGCCT GGAGAAGGCGCGGGTGATCTTCGACGGCAGCGCCCGCGAGGCGGCGCGGCTCTATCCGAAGAACGCCAATGTCGCCGCCACCCTGTCGCTCGCCGGCCTC GGCCTGGACCGCACCCAGGTGCGCCTGATCGCCGACCCCGAAAGCTGCGAGAACGTGCACCAGGTGGAAGCCAGCGGCGCCTTCGGCGGCTTCGAACTGA CCTTGCGCGGCAAACCGCTGGCGGCCAACCCGAAGACATCGGCGCTGACCGTGTACAGCGTGGTCCGAGCGTTGGGCAACCACGCCCACGCGATTTCGAT CTAG

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MLNIVMIGCGAIGAGVLELLENDPQLRVDAVIVPRDSETQVRHRLASLRRPPRVLSALPAGERPDLLVECAGHRAIEQHVLPALAQGIPCLVVSVGALSE PGLVERLEAAAQAGGSRIELLPGAIGAIDALSAARVGGLESVRYTGRKPASAWLGTPGETVCDLQRLEKARVIFDGSAREAARLYPKNANVAATLSLAGL GLDRTQVRLIADPESCENVHQVEASGAFGGFELTLRGKPLAANPKTSALTVYSVVRALGNHAHAISI

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
PubMed  


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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