Pseudomonas Genome Database - Annotation for PA3513

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PA3513

Key to diagram

View in GBrowse:

View metabolic pathways using PseudoCyc

Acknowledgements for this annotation

Overview
Functional Data
Sequence Data
Operons/Regulons
References

Gene Information
Strain	Pseudomonas aeruginosa PAO1 (Tax ID: 208964)	Replicon	Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name		Alternate Gene Names
Locus tag	PA3513 (View 9 updates) Submit an Update	GenBank Identifier (GI)	15598709 (Precomputed BLAST results at BLINK )
Genomic location	3929338 - 3928331 (-)	Feature type	CDS
Transposon Mutant Available?	Yes (View in GBrowse)	Pseudomonas Ortholog Group
Product Information
Product Name	hypothetical protein (Class 4 )
Alternate Product Names
Subcellular localization	Unknown (Class 3)
Alternate Annotations and Cross-References
TIGR	NTL03PA03513
Systomonas	PA3513
RefSeq	NP_252203.1
GI	15598709
KEGG	PA3513
GBrowse	Click here for a GBrowse View of this and other annotations.
PseudoCyc	Click here to view metabolic pathways in PseudoCyc.

Function Classification / Gene Ontology (GO)

PseudoCAP Function Class

Hypothetical, unclassified, unknown

GO Accession

GO Term

Evidence

Molecular Function

GO:0005488	binding	IEA
GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA

Biological Process

GO:0042918

alkanesulfonate transport

IEA

Cellular Component

GO:0009897	external side of plasma membrane	IEA
GO:0030288	outer membrane-bounded periplasmic space	IEA
GO:0043190	ATP-binding cassette (ABC) transporter complex	IEA

COG Prediction

Accession	Description	Category
COG0715	TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	Inorganic ion transport and metabolism

TIGRFAM prediction

Accession	Name	Function	Significance	Role	Sub Role	Release No.
TIGR01728	SsuA_fam	ABC transporter, substrate-binding protein, aliphatic sulfonates family	3.2e-26	Transport and binding proteins	Other	8.0

Pathways

Name	Database	Xref
ABC transporters	KEGG	pae02010	Computationally Generated

Homology

BLINK

Precomputed BLAST results at BLINK

Homologs

48% similar to hypothetical protein [Synechocystis sp.]

Structure Features

type I export signal computationally predicted by LipoP v.1.0 (cleavage after residue 23)
type I export signal computationally predicted by Phobius (cleavage after residue 23)
type I export signal computationally predicted by SignalP v.3.0 Hidden Markov Models (cleavage after residue 23)

PFAM predictions

Accession	Domain	Start	Stop	E-value	Release No.
PF09084	NMT1, NMT1/THI5 like.	38	250	6e-24	23.0

Microarray Expression Data

NCBI GEO

Link

Upstream 500 BP Region

CGCGGCCGGCGAACGGCGCGCCATCGCCGAGGAAATGCTGGAGAAGTGTCACCTCGCCGGTTTCGCCGAGCACTATCCGTTCCAGCTTTCCGGCGGCATG CGCCAACGCGCCGCCCTGGCCCGAACCCTGGCCACCGACCCGCAGGTGCTGTTCCTCGACGAGCCGTTCTCGGCCCTCGACGCGCAGACCAAGATGATCC TCCAGCAGGACCTGGCGCGGATGCTCTGCGAGCAACGCAAGACCGCGCTGTTCATTACCCACGACCTGGTCGAGGCGATCGCCATGTCCGATCGCATCCT GGTGATGAGCGCGCGGCCGGGCACCATCGTCGAGGAGATCGAGGTCGGCCTGCCGCTGCGCGACAACCCGCTGGAGCGCCGCAAGCTGCCGGAGATCGGG CCGCTGGTCGGGCGCCTGATGACCCTGCTGAAAGTGGGCGAGAGCGCCGAGCTGCACTGATCGCCGCCTGCCGATCCGAATTCCGTTACAGGAGCCGCTG

Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence

ATGTCCAAGTCATTGCTCAACGCCGCATTGTGCGGCGCGTTGTTCGCCGCCGGCCTGACCGTCCAGGCCGCCCCGCGGGAAGTCACCTACCTGCTGCCGG CACCGCCGAACTCGCCGGCCTTCGCACCCTGGGTGATCGCCCGGGAGAAGGGCTACTACGCCGACCTGGGCCTGAAGGTGACCTTCGTCGCCGGCAAGGG CGGGGTCGACGTGGCCAAGCAGATCGGCGCCGGCAACGCACCGGTCGGCGGCGCCATCGGCGATACGCCGATCGTGGTGCGCGCCAACGGCATCCCGGTG AAAGCCGTGGCGGTGCTCGGTGCCGGCGGGGTGACCATGATCGCCACCGATGGCACGGCCGGTATCGACAGCGTCAAGGACCTCAAGGGCAAGACCCTGA CCGTGATGTCCTACTCCGACACCACCTACTACGCCCTGCTGGCGTCGATGCGCAAGGCTGGCCTGGGCAAGTCCGACGTGGACATCCAGGCGGCCGGCCC ATCCGGCGTCTGGCAACTGTTCTCCGCCGGCCGCTCGCAGGCCATGGCCGGCGTGCCGGACTGGGTGGTGAGTGCCGAGGATGCCGGCCGGCAGGTGAAG TTGCTGCCGGGCAGCGAGGTGTTCGAGAGCATGGCCCAGGCGATCCTCGCCTCGGACGAGGCCATCGAGAAGCAGCCTGAGGTGGTCGGCGGGGTGGTCA GGGCGACCCTCATGGGCATGCGCGACATCATCGCCGACCCAAGGCAGGCCGCCGCCACCTTCGCTGCCGCGGTGCCCGCCTACAAGGGCCGCGAGGCCAG CCTGGAACGGGTCCTGCGGCTCTATGTCGAGCACGTCTACGCCAACCAGCAGCCGCTCGGGCACATCGATCCGCAGCGCCTGGACAAGGTTCGCAGGTTC TACGTCAGCGAAGGCATCGTCGGCCGCGAGACGCCGCTGGACGAGCTTTACACCAACCGTTTCGTCGAGTCCGCCGACCTGACCGCGCAGCACGGAGCCC GCCCATGA

Downstream 500 BP region

Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.

Protein Sequence

MSKSLLNAALCGALFAAGLTVQAAPREVTYLLPAPPNSPAFAPWVIAREKGYYADLGLKVTFVAGKGGVDVAKQIGAGNAPVGGAIGDTPIVVRANGIPV KAVAVLGAGGVTMIATDGTAGIDSVKDLKGKTLTVMSYSDTTYYALLASMRKAGLGKSDVDIQAAGPSGVWQLFSAGRSQAMAGVPDWVVSAEDAGRQVK LLPGSEVFESMAQAILASDEAIEKQPEVVGGVVRATLMGMRDIIADPRQAAATFAAAVPAYKGREASLERVLRLYVEHVYANQQPLGHIDPQRLDKVRRF YVSEGIVGRETPLDELYTNRFVESADLTAQHGARP

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK

Operons/Regulons

Type

operon

Genes

Gene	Product
PA3504	probable aldehyde dehydrogenase
PA3505	hypothetical protein
PA3506	probable decarboxylase
PA3507	probable short-chain dehydrogenase
PA3508	probable transcriptional regulator
PA3509	probable hydrolase
PA3510	hypothetical protein
PA3511	probable short-chain dehydrogenase
PA3512	probable permease of ABC transporter
PA3513	hypothetical protein
PA3514	probable ATP-binding component of ABC transporter

Evidence

Computationally Predicted

PubMed

18988623

Cross-Reference

DOOR-13822

PubMed

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE.
Genome Res. 2005 Feb;15(2):321-9.
PMID: 15687295
Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.
Kaneko T, Sato S, Kotani H, Tanaka A, Asamizu E, Nakamura Y, Miyajima N, Hirosawa M, Sugiura M, Sasamoto S, Kimura T, Hosouchi T, Matsuno A, Muraki A, Nakazaki N, Naruo K, Okumura S, Shimpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S.
DNA Res. 1996 Jun 30;3(3):109-36.
PMID: 8905231