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               PA4422               
Key to diagram


View in GBrowse: 16 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names yraL
Locus tag PA4422 (View 4 updates) Submit an Update GenBank Identifier (GI) 15599618 (Precomputed BLAST results at BLINK )
Genomic location 4957582 - 4956734 (-) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name conserved hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA04423
Systomonas PA4422
RefSeq NP_253112.1
GI 15599618
KEGG PA4422
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Hypothetical, unclassified, unknown
Homology
BLINK Precomputed BLAST results at BLINK
Homologs Explanation of Homologs Field 75% similar to hypothetical protein YraL [Escherichia coli]
Structure Features
Structure Features Explanation of Structure Features Field PS01296: Uncharacterized protein family UPF0011 signature
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF00590 TP_methylase, Tetrapyrrole (Corrin/Porphyrin) Methylases. 5 206 4e-36 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region TCGCTGAGATGCTGCATGCTCGGATGCTGCAATGCCTGCAGGGCGGCCTTGGGCTTGCTGCGGGCGAGGGCCAGTTCGGCGTTCAGGGTGCTGGCGAAGA CCTGCTGGGCCGGCTTCAGGCTTTCCAGCGGAATCTGTCCCAGGATGGCGGTGGACCTGGCGAGGTCCTTCTGCTGGTAGGCAAGGTCCGCTGCCGAGAG GCGCAGCAGCGCCGCTTCCTCGGGCTTGCTCTGGCTGGCCTGTTGCAACAACTGCTCGATGCTGGCATTCGGCGTACGGGGAAGTTCGCCCAGTCCGGAA TTGGACGAGGTCGCGCAGGCGGTCAGCAGACCGGCCAGGATCAGAGCAGAAAGCGGACGCAGGCAAGCGATCATATAGGGCTTCTCATGGCGCATTCACG AAGAGTCGCCGATTGTACCGGAGGCCCGCCTCGGGTGCGATGGCGGCACCCTGAATCGCGATACAATGCCGCCTTTTCAGATAGCTCCCGAGGTATTTTC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence GTGTCAGCAGGCACTCTGTTCGTAGTGGCGACCCCGATCGGCAATCTCGACGACATCAGCCCGCGCGCCCTGCGGGTGCTGCGGGAGGTGGCCCTGGTGG CTGCGGAGGATACCCGCCATTCGATCCGGCTGTTCCAGCACTTCGGCATCGAGACGCCATTGGCGGCCTGCCACGAGCACAACGAGCGCGAGGAGGGCGG GCGCTTCATCTCCCGGCTGCAGGGTGGGGAGGACGTCGCGCTGATCTCGGACGCCGGTACCCCGCTGATTTCCGATCCCGGCTTCCACCTGGTGCGCCAG GCACAGGCGCTGGGTATCCGGGTGGTCCCGGTGCCGGGCTCCTGCGCGCTGATCGCGGCGCTGTCGGCGGCGGGATTGCCGTCGGACCGGTTCATCTTCG AAGGTTTCCTGCCCGCCAAGGCTGCGGGACGACGCAGCCGCCTCCAGGCGGTACAGGAAGAGCCGCGCACGCTGATTTTCTACGAGGCGCCCCATCGTCT GCTGGAAAGCCTGGCGGACATGCGCGACGTGTTCGGCGGGGAGCGCCGTGCGGTGCTGGCGCGGGAGCTGAGCAAGACCTTCGAGACCATTCGCAGCCTG CCGTTGGCCGAACTGCACGATTGGGTCGCGTCGGACAGCAACCAGCAGCGCGGCGAGTGCGTTGTGCTGGTGGCGGGGTGGCAGGCGCCGGAAGGCGAGG AGTCGATCGGTGCGGAGGCGCTCAGGGTGCTCGACCTGCTGCTTGCCGAGCTGCCGTTGAAGAAAGCCGCGGCGCTGGCGGCGGAAATTACCGGGGTGCG AAAAAACCTTTTGTATCAACAGGCTTTGCAACGCCAAGGGAAGAGTTGA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MSAGTLFVVATPIGNLDDISPRALRVLREVALVAAEDTRHSIRLFQHFGIETPLAACHEHNEREEGGRFISRLQGGEDVALISDAGTPLISDPGFHLVRQ AQALGIRVVPVPGSCALIAALSAAGLPSDRFIFEGFLPAKAAGRRSRLQAVQEEPRTLIFYEAPHRLLESLADMRDVFGGERRAVLARELSKTFETIRSL PLAELHDWVASDSNQQRGECVVLVAGWQAPEGEESIGAEALRVLDLLLAELPLKKAAALAAEITGVRKNLLYQQALQRQGKS

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA4422 gene of Pseudomonas aeruginosa PAO1, Chromosome (4956734 to 4957582 bp)


Displaying the first five SNPs out of a total of 43 found in all isolate strains ( View all 43 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa 2192 Transversion g.4956735C>G p.Ter283Gln
 Missense
TGA() -> CAG(Gln) 		SNP-64501 View
Pseudomonas aeruginosa 2192 Transversion g.4956743C>G p.Gly280Ala
 Missense
GGG(Gly) -> GCA(Ala) 		SNP-64502 View
Pseudomonas aeruginosa PA7 Transition g.4956752T>C
Silent
CAA(Gln) -> CAG(Gln) 		SNP-356175 View
Pseudomonas aeruginosa 2192 Indel g.4956781delT
1 BP Deletion
(Frameshift) 		SNP-65145 View
Pseudomonas aeruginosa PA14 Transition g.4956794A>G
Silent
ATT(Ile) -> ATC(Ile) 		SNP-153615 View
Select to view SNPs in a specific strain
SNP Map
PubMed  


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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