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               PA5357               
Key to diagram


View in GBrowse: 16 putative orthologs View metabolic pathways using PseudoCyc Acknowledgements for this annotation
Gene Information
Strain Pseudomonas aeruginosa PAO1 (Tax ID: 208964) Replicon Chromosome(5651 genes, 6264404 bp) [ RefSeq ]
Gene name   Alternate Gene Names ubiC
Locus tag PA5357 (View 4 updates) Submit an Update GenBank Identifier (GI) 15600550 (Precomputed BLAST results at BLINK )
Genomic location 6024742 - 6025278 (+) Feature type CDS 
Transposon Mutant Available?Transposon mutant library help Yes (View in GBrowse) Pseudomonas Ortholog Group Explanation of Orthologous Groups
Product Information
Product Name hypothetical protein (Class 4  Explanation of Product Name Confidence)
Alternate Product Names
Subcellular localization
Cytoplasmic (Class 2Explanation of Localization Confidence)
Cytoplasmic (Class 3Explanation of Localization Confidence)
Alternate Annotations and Cross-References
TIGR NTL03PA05358
Systomonas PA5357
RefSeq NP_254044.1
GI 15600550
KEGG PA5357
GBrowse Click here for a GBrowse View of this and other annotations.
PseudoCyc Click here to view metabolic pathways in PseudoCyc.
Function Classification / Gene Ontology (GO)
PseudoCAP Function Class Biosynthesis of cofactors, prosthetic groups and carriers
Pathways
Pathways Explanation of Pathways Field
Name Database Xref
Ubiquinone biosynthesis PseudoCAP
Ubiquinone and other terpenoid-quinone biosynthesis KEGG pae00130 Computationally Generated
Metabolic pathways KEGG pae01100 Computationally Generated
Homology
BLINK Precomputed BLAST results at BLINK
Structure Features
PFAM predictions Explanation of PFAM predictions
Accession Domain Start Stop E-value Release No.
PF04345 Chor_lyase, Chorismate lyase. 1 175 3e-66 23.0
 
Microarray Expression Data
NCBI GEO Link
Upstream 500 BP Region ACGCGGCACCGAGGCAGACTTCGTCCTGCTCGCCCGGCGCTACGAAGAGATGCTCGCCAGCCACGAGGAAACCCAGCCGATCGATCCCCGCGAGCACGCC CGCCGCGACCACGCGTTCCACCGGGCGATCAGCGAGGCATCGCACAATCCGGTGCTGGTGCATACCCTGCAATCGCTCAACGAACTGCTGCTGAGCACGG TGTTCGCCTCAGTGAACAACCTCTACCACCGACCGCCGCAGAAACGCCAGATCGACCGCCAGCACGCGCGCCTCTACGCGGCCCTCCGCGAGCGCCAGCC GGACCAGGCGCAACGGGCGGCGCGCGAACATATCCACAGCATCCGCGACAACCTGCGGGAGATCGAGCAGGAAGAACAGCGCCTGGTCCGCGCCACCCTG CGCCTGAACGGCTGGGGCTGACGCGCCACCGCGTCGCAGACCGGCCGCCGGCCGAACGTGCTACCCTCGCCGCCTTCTGCCGCCGTCTCGTAGTCCCGTC

BLAST search against this genome or other genomes in database
Need more than 500 BP? Try our sequence retrieval tool or view intergenic regions in GBrowse.

DNA Sequence ATGCCCAGCAATGCGCTCTGGCTTCGCGCCGACCAACTGTCCAGCGTCTCCCCCGCCGTCCTCGACTGGCTGTTCGACGAGGGGTCGCTGACCCGGCGCC TGACCGCCCTGGCCGACGGCGCGTTCCGCGTCGAACCCCTGCTGGAAGGCTGGCAGACCCTGCGCGACGACGAATGCCAGGGGCTCGACGTCCCTACCGG CAGTAGCGGCTGGGTCCGCGAGGTCTACCTGCATGGCCACGACCGTCCCTGGGTGTTCGCCCGCAGCGTGGCGGCGCGCAGCGCCCTGGAAGGCTCGGGC TTCGACCTGGCGCTGCTCGGCACCCGCTCGCTGGGCGAGTTGCTGTTCAGCGACAGCGCCTTCGAGCGCGGGCCCATCGAAGTCTGCCGCTATCCGGCGG CCGGTCTGCCCGCCGAGGTCCGCGCCGAGGGTCTCTGGGGCCGTCGCTCACGGTTTTCCCGCGGCGCGCTCGGGGTGCTGGTGGCGGAGGTGTACCTACC GCGCCTGTGGGACCAGGCGGGAATCGCCGACGTATAA

BLAST search against this genome or other genomes in database

Downstream 500 BP region Click here to view the nucleotide sequence of the region 500 BP downstream of this gene.
Protein Sequence MPSNALWLRADQLSSVSPAVLDWLFDEGSLTRRLTALADGAFRVEPLLEGWQTLRDDECQGLDVPTGSSGWVREVYLHGHDRPWVFARSVAARSALEGSG FDLALLGTRSLGELLFSDSAFERGPIEVCRYPAAGLPAEVRAEGLWGRRSRFSRGALGVLVAEVYLPRLWDQAGIADV

BLAST search against this genome or other genomes in database
View precomputed BLAST results against all genomes at NCBI BLINK
SNPs NOTE: This feature is currently open to beta-testing. We welcome feedback on how to improve this new resource. Please send any comments to pseudocap-mail@sfu.ca.

Showing SNPs occurring in PA5357 gene of Pseudomonas aeruginosa PAO1, Chromosome (6024742 to 6025278 bp)


Displaying the first five SNPs out of a total of 51 found in all isolate strains ( View all 51 )
Strain Type Mutation Description Effect Details GBrowse
DNA Protein
Pseudomonas aeruginosa PA7 Transition g.6024753T>C
Silent
AAT(Asn) -> AAC(Asn) 		SNP-351366 View
Pseudomonas aeruginosa PA7 Transition g.6024758T>C p.Leu6Pro
 Missense
CTC(Leu) -> CCC(Pro) 		SNP-351367 View
Pseudomonas aeruginosa PA7 Transition g.6024765T>C
Silent
CTT(Leu) -> CTC(Leu) 		SNP-351368 View
Pseudomonas aeruginosa 2192 Transversion g.6024783C>A
Silent
TCC(Ser) -> TCA(Ser) 		SNP-59441 View
Pseudomonas aeruginosa PACS2 Transversion g.6024783C>A
Silent
TCC(Ser) -> TCA(Ser) 		SNP-125137 View
Select to view SNPs in a specific strain
SNP Map
Operons/Regulons
Type operon
Genes
GeneProduct
glcC transcriptional regulator GlcC
PA5357 hypothetical protein
ubiA 4-hydroxybenzoate-octaprenyl transferase
Evidence Computationally Predicted
PubMed 18988623
Cross-Reference DOOR-14218
PubMed Mutants of Escherichia coli affected in respiration: the cloning and nucleotide sequence of ubiA, encoding the membrane-bound p-hydroxybenzoate:octaprenyltransferase.
Wu G, Williams HD, Gibson F, Poole RK.
J Gen Microbiol. 1993 Aug;139(8):1795-805.
PMID: 8409922
 


We thank Cystic Fibrosis Foundation Therapeutics, Inc. for critical funding support for the Pseudomonas Genome Database. When acknowledging use of the database, please cite the article by Winsor et al. (2009; PMID:18978025) and not the web site URL. Thank you!

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