Motif View

Internal ID 17655968
Source Database TransTermHP TERM 569
Feature Type terminator
Name
Rho-independent transcription terminator TERM 569
Sequence CGCCCTGTGTTGCCCGTTTCCCCGCCAGGGGATGCCCGGCACGCAGGGCG
Look for more occurrences
Start 2638861
End 2638910
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACATGCAACGAAAA(5' tail) CGCCCTGCG-TGCCGGGCATCCCC(5' stem) TGGC(loop) GGGGAAACG-GGCAACACAGGGCG(3' stem) TAGCGGCGTGGCGCC(3' tail). Confidence: 100. overlap 2638904

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685