Search the Database
You may use this search function to search the continually updated PAO1 database by annotation and/or sequence and then compare selected annotations. Additionally, you may wish to search the log file describing all database updates. By default, wild cards are enabled for all searches.
- Advanced Boolean Search of updated annotations by field and genome
- Comparative search by presence or absence of genes in Pseudomonas genomes
- BLAST search of genomic DNA or protein sequences
- Combined Search of both Pseudomonas and Burkholderia Genome Databases
- Browse annotations by:
- Function classification
- Subcellular localization
- Virulence factor
- Drugs and their targets
- Genomic islands
Search Hint: We also recommend, as a complement to searching the annotations, that you search, using BLAST, for homologs to a protein of interest, to find additional genes/proteins of interest that may have annotations that don't show up in your annotation search (i.e. if you want all homologs of a particular membrane protein, but the particular membrane protein has been named differently by different Pseudomonas Genome Projects). From a BLAST search you can also select genes/proteins of interest for further study, and compare them using the Compare feature with other genes/proteins you hold on your clipboard.
