This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa PAO1 (Stover et al., 2000) | GCF_000006765.1 latest |
- | Complete Genome | 5688 (0) | SAMN02603714 | human | wound | Australia: Melbourne | 549 (paeruginosa) | PathoGenesis Corporation |
Strain Details
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Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006) | GCF_000014625.1 latest |
- | Complete Genome | 5977 (0) | SAMN02603591 | human | burn | burn wound | 253 (paeruginosa) | Massachusetts General Hospital |
Strain Details
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Pseudomonas aeruginosa PA7 | GCF_000017205.1 latest |
- | Complete Genome | 6369 (0) | SAMN02603435 | human | non-respiratory clinical isolate | Argentina | 1195 (paeruginosa) |
J. Craig Venter Institute
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Strain Details
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Pseudomonas aeruginosa PAK (Cain et al., 2019) - Assembly GCF_902172305.2 | GCF_902172305.2 latest |
- | Complete Genome | 5848 (26) | SAMEA1695737 | human | 693 (paeruginosa) |
European Bioinformatics Institute
SC
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Strain Details
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Pseudomonas aeruginosa PAK - Assembly GCF_000568855.2 | GCF_000568855.2 latest |
- | Complete Genome | 5564 (96) | SAMN02483603 | human | 693 (paeruginosa) | University of Texas at Austin |
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Pseudomonas putida KT2440 (TIGR) | GCF_000007565.2 latest |
- | Complete Genome | 5729 (0) | SAMN02603999 | soil | 69 (pputida) |
TIGR
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Strain Details
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Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) | GCF_000007805.1 latest |
- | Complete Genome | 5842 (0) | SAMN02604017 | tomato | bacterial speck |
TIGR
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Strain Details
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Pseudomonas aeruginosa CF39S | GCF_011466835.1 latest |
- | Complete Genome | 6780 (52) | SAMN13226654 | human | Cystic Fibrosis | lung | USA: Seattle, Washington | 175 (paeruginosa) | University of Calgary |
Strain Details
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Pseudomonas fluorescens SBW25 | GCF_000009225.2 latest |
- | Complete Genome | 6106 (5) | SAMEA2272316 | sugar beet | sugar beet leaf | United Kingdom: Oxfordshire |
NERC Institute of Virology and Microbial Ecology,
Wellcome Trust Sanger Institute
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Strain Details
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Pseudomonas savastanoi pv. phaseolicola 1448A | GCF_000012205.1 latest |
- | Complete Genome | 5437 (0) | SAMN02603162 | kidney bean | halo blight |
Cornell University
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Strain Details
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Pseudomonas stutzeri A1501 | GCF_000013785.1 latest |
- | Complete Genome | 4209 (0) | SAMN02603910 | soil, rice roots | China |
The Biotechnology Research Institute,The Chinese Academy of Agricultural Sciences
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Strain Details
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Pseudomonas aeruginosa LESB58 | GCF_000026645.1 latest |
- | Gapless Chromosome | 6028 (0) | SAMEA1705916 | human | cystic fibrosis | sputum | United Kingdom: Liverpool | 146 (paeruginosa) |
Wellcome Trust Sanger Institute
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Strain Details
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Pseudomonas protegens Pf-5 | GCF_000012265.1 latest |
- | Complete Genome | 6273 (0) | SAMN02604012 | soil | USA: Texas |
TIGR
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Strain Details
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Pseudomonas abietaniphila ATCC 700689 | GCF_900100795.1 latest |
54 | Contig | 6535 (107) | SAMN05216605 | missing | missing | DOE Joint Genome Institute |
Strain Details
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Pseudomonas abietaniphila KF701 | GCF_000974525.1 latest |
140 | Contig | 6154 (98) | SAMD00023455 | Japan:Kitakyushu |
AIST Bioproduction Research Institute microbial and genetic resource research group
National Institute of Advanced Industrial Science and Technology (AIST)
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Strain Details
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Pseudomonas abietaniphila KF717 | GCF_000876035.1 latest |
97 | Contig | 6158 (114) | SAMD00023465 | Japan:Kitakyushu |
AIST Bioproduction Research Institute microbial and genetic resource research group
National Institute of Advanced Industrial Science and Technology (AIST)
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Strain Details
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Pseudomonas abyssi MT5 | GCF_002307495.1 latest |
79 | Contig | 3975 (81) | SAMN07634961 | Deep Sea Water | Shanghai Ocean University |
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Pseudomonas acidophila ATCC 31363 | GCF_002362315.1 latest |
11 | Contig | 6173 (78) | SAMN06246902 | soil | University of Notre Dame |
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Pseudomonas aegrilactucae MAFF 301350 | GCF_019168305.1 latest |
- | Contig | 5084 (277) | SAMN19959866 | Japan:Fukuoka | National Agriculture and Food Research Organization (NARO) |
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Pseudomonas aeruginosa #700 | GCF_030688825.1 latest |
- | Contig | 6779 (64) | SAMN36630189 | non-cystic fibrosis | sputum | China | 235 (paeruginosa) | Second Affiliated Hospital of Zhejiang University |
Strain Details
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