Strain Overview | |
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Organism Name | Pseudomonas syringae pv. actinidiae CRAFRU8.43 |
Species | Pseudomonas syringae pv. actinidiae |
Strain | CRAFRU8.43 |
Description/Title | Sample from Pseudomonas syringae pv. actinidiae str. CRAFRU8.43 |
Annotated Genes | 5456 |
Partial Genes | 123 |
Host Information |
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Geographic Location |
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Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 585 |
Contig N50 | 22372 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02471300 |
NCBI Taxonomy ID | 1052681 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5393 |
CDS | 5325 |
pseudo | 63 |
tRNA | 51 |
ncRNA | 3 |
rRNA | 3 |
Localization | Count |
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Cytoplasmic | 2247 |
Cytoplasmic Membrane | 1183 |
Periplasmic | 170 |
Outer Membrane | 120 |
Extracellular | 83 |
Unknown | 1410 |
Unknown (This protein may have multiple localization sites) | 112 |
Flagellar | 19 |
Fimbrial | 13 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |