October 15, 2006 - PseudoCyc Version 10.0 released
Upgraded to Pathway Tools version 10.5.
Added 1013 new computational operon predictions derived from PathoLogic (part of the Pathway Tools software package)
Added 97 computationally-predicted transporter proteins and 54 computationally-predicted transport reactions identified using PathoLogic's Transporter Identification Parser (part of the Pathway Tools software package).
August 8, 2006 - PseudoCyc Version 9.6 released
Linked Kynurenine formamidase (PA2081,kynB) to EC 3.5.1.9 in the tryptophan degradation III pathway. Added new evidence reference for enzyme function: 14592712.
Updated gene and protein names using updated Pseudomonas Genome database annotation (2006-Jul-16).
Linked branched-chain amino acid transferase (PA5013,ilvE) to EC 2.6.1.42.
Linked putative isovaleryl-CoA dehydrogenase (Class 2 product name confidence) encoded by PA2015/liuA to EC 1.3.99.10 in leucine degradation II pathway.
Linked methylcrotonyl-CoA carboxylase complex (Class 1 product name confidence) encoded by liuB,liuD to EC 6.4.1.4.
Linked putative 3-methylglutaconyl-CoA hydratase(Class 3 product name confidence) encoded by PA2013/liuC to EC 4.2.1.8.
Linked 3-hydroxy-3-methylglutaryl-CoA lyase(Class 2 product name confidence) encoded by PA2011,liuE to EC 4.1.3.4.
New pathway: Acyclic monoterpene utilization. New evidence references (PMIDs) for this pathway: 16820476 ; 16272386 ; 16517656. Pathway reviewed by Dieter Jendrossek, Institute for Microbiology, Germany.
New pathway: Phenazine biosynthesis.