The Pseudomonas Genome Database collaborates with an international panel of expert Pseudomonas researchers to provide high quality updates to the PAO1 genome annotation and make cutting edge genome analysis data available
|Manually-curated annotation updates||3645|
|Curated GO terms||4419|
October 9, 2019
Pseudomonas Genome Database version 19.1 released.
102 curated updates to annotations.
4262 new Pseudomonas spp. genomes added for a total of 9109. Database now has 4660 P. aeruginosa genomes.
New search feature to identify P. aeruginosa, P. putida and P.fluorescens genomes based on predicted MLST sequence type. Predictions made using Torsten Seemann's 'mlst' software (Github https://github.com/tseemann/mlst) and schemes from the PubMLST database (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) .
Enhancements made to increase speed of diamond blastp searches against entire database of protein sequences.
Updated InterPro motif predictions and computationally-predicted GO term annotations (based on InterProScan v5.36-75.0).
Updated RCSB PDB 3D structures, AMR gene predictions (CARD 3.0.2), drug targets (DrugBank 5.1.4) and human homologs (based on Ensembl 97) .
Strains and Isolates in the Database
We welcome all suggested updates to Pseudomonas annotations and no registration is required!
PseudoCAP was the first wholly Internet-based and community-based genome annotation project for analysis of a genome of a free-living organism.
Funding for this work is gratefully provided by Cystic Fibrosis Foundation Therapeutics Inc., a non-profit drug discovery and development affiliate of the Cystic Fibrosis Foundation.