Pseudomonas aeruginosa PAO1, PA0958 (oprD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| transcriptional initiation site (+1) | 1045403 | 1045403 | - |
|
10223918 | Details |
| ArgR binding site | 1045459 | 1045501 | - |
|
10223918 | Details |
| ArgR retarded fragment upstream of oprD gene | 1045360 | 1045614 | - |
|
10464217 | Details |
| ArgR protected fragment upstream of oprD gene | 1045459 | 1045501 | - |
|
10464217 | Details |
| oprD promoter | 1045398 | 1045447 | - |
|
10464217 | Details |
| ArgR binding site | 1045459 | 1045501 | - |
ECO:0000314
direct assay evidence used in manual assertion |
12670680 | Details |
| Shine-Dalgarno sequence | 1045323 | 1045327 | - |
ECO:0000256
match to sequence model evidence used in automatic assertion |
Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GAAAAAACCCGGC-N3-GCCGGGTTTTTTC | 1043938 | 1043966 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Rho-independent transcription terminator TERM 263 | 1043938 | 1043966 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 264 | 1043945 | 1043959 | - |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |
| Rho-independent transcription terminator TERM 265 | 1043945 | 1043959 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
17313685 | Details |