Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA1046
|
Name |
|
Replicon | chromosome |
Genomic location | 1131674 - 1133947 (+ strand) |
Transposon Mutants | 4 transposon mutants in PAO1 |
Transposon Mutants in orthologs | 2 transposon mutants in orthologs |
Comment | Structural similarity to 4BQ3: B-agarase (root-mean-square deviation: 0.8 angstroms) |
Comment | 99% identical to beta-1,3-glucanase (GenBank: KY865343.1) in P. aeruginosa CAU 342A |
RefSeq | NP_249737.1 |
GI | 15596243 |
Affymetrix | PA1046_at |
Entrez | 879650 |
GenBank | AAG04435.1 |
INSDC | AAG04435.1 |
NCBI Locus Tag | PA1046 |
protein_id(GenBank) | gb|AAG04435.1|AE004536_14|gnl|PseudoCAP|PA1046 |
TIGR | NTL03PA01047 |
UniParc | UPI00000C5220 |
UniProtKB Acc | Q9I4S8 |
UniProtKB ID | Q9I4S8_PSEAE |
UniRef100 | UniRef100_Q9I4S8 |
UniRef50 | UniRef50_B1J1C1 |
UniRef90 | UniRef90_W0YPS0 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
beta-agarase
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Detected by MALDI-TOF/TOF (PMID:19333994).
|
Charge (pH 7) | -5.37 |
Kyte-Doolittle Hydrophobicity Value | -0.204 |
Molecular Weight (kDa) | 82.7 |
Isoelectric Point (pI) | 6.18 |
Individual Mappings | |
Additional evidence for subcellular localization |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 31 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG001008 (450 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA1046
Search term: beta-agarase
|
Cloning and sequencing of agaA, a unique agarase 0107 gene from a marine bacterium, Vibrio sp. strain JT0107.
Sugano Y, Matsumoto T, Kodama H, Noma M
Appl Environ Microbiol 1993 Nov;59(11):3750-6
PubMed ID: 8285681
|
Sequence analysis of the agaB gene encoding a new beta-agarase from Vibrio sp. strain JT0107.
Sugano Y, Matsumoto T, Noma M
Biochim Biophys Acta 1994 May 17;1218(1):105-8
PubMed ID: 8193156
|
Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile opportunistic pathogen.
Imperi F, Ciccosanti F, Perdomo AB, Tiburzi F, Mancone C, Alonzi T, Ascenzi P, Piacentini M, Visca P, Fimia GM
Proteomics 2009 Apr;9(7):1901-15
PubMed ID: 19333994
|
Uncovering the structure and function of Pseudomonas aeruginosa periplasmic proteins by an in silico approach.
Caprari S, Brandi V, Pasquadibisceglie A, Polticelli F
J Biomol Struct Dyn 2020 Sep;38(15):4508-4520
PubMed ID: 31631799
|