Pseudomonas aeruginosa PAO1, PA4270 (rpoB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006351 transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
6266829 Reviewed by curator
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0032549 ribonucleoside binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR20856
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pae03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pae01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.90.1110.10:FF:000004 DNA-directed RNA polymerase subunit beta - - 343 451 1.1E-51
Gene3D G3DSA:3.90.1800.10 RNA polymerase alpha subunit dimerisation domain - - 1267 1320 2.5E-15
Pfam PF04565 RNA polymerase Rpb2, domain 3 IPR007645 RNA polymerase Rpb2, domain 3 518 585 4.9E-30
FunFam G3DSA:3.90.1110.10:FF:000001 DNA-directed RNA polymerase subunit beta - - 157 272 4.4E-45
Pfam PF10385 RNA polymerase beta subunit external 1 domain IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain 596 661 2.4E-20
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 11 1357 0.0
Gene3D G3DSA:2.40.270.10 - IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily 1055 1257 2.0E-79
Gene3D G3DSA:3.90.1110.10 RNA polymerase Rpb2, domain 2 IPR037034 RNA polymerase Rpb2, domain 2 superfamily 302 446 1.0E-32
Pfam PF04563 RNA polymerase beta subunit IPR007644 RNA polymerase, beta subunit, protrusion 26 504 8.9E-41
PANTHER PTHR20856 DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 IPR015712 DNA-directed RNA polymerase, subunit 2 600 1353 0.0
NCBIfam TIGR02013 JCVI: DNA-directed RNA polymerase subunit beta IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type 8 1354 0.0
Pfam PF04560 RNA polymerase Rpb2, domain 7 IPR007641 RNA polymerase Rpb2, domain 7 1281 1356 6.2E-27
FunFam G3DSA:2.40.50.150:FF:000001 DNA-directed RNA polymerase subunit beta - - 838 943 6.4E-59
Gene3D G3DSA:3.90.1100.10 - - - 447 718 1.8E-80
Gene3D G3DSA:6.10.140.1670 - - - 949 1054 3.3E-28
FunFam G3DSA:3.90.1800.10:FF:000001 DNA-directed RNA polymerase subunit beta - - 1267 1320 5.5E-36
Pfam PF00562 RNA polymerase Rpb2, domain 6 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain 722 1279 0.0
Gene3D G3DSA:2.40.50.150 - IPR014724 RNA polymerase Rpb2, OB-fold 822 948 9.3E-20
Pfam PF04561 RNA polymerase Rpb2, domain 2 IPR007642 RNA polymerase Rpb2, domain 2 359 459 1.1E-14
Pfam PF04561 RNA polymerase Rpb2, domain 2 IPR007642 RNA polymerase Rpb2, domain 2 156 227 1.9E-8
FunFam G3DSA:2.40.50.100:FF:000006 DNA-directed RNA polymerase subunit beta - - 721 802 3.1E-40
Gene3D G3DSA:3.90.1100.10 - - - 18 178 6.8E-48
Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type 13 1357 12.348915
Gene3D G3DSA:2.40.50.100 - - - 719 800 2.0E-30
Gene3D G3DSA:2.30.150.10 - IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily 595 661 3.0E-22
CDD cd00653 RNA_pol_B_RPB2 IPR015712 DNA-directed RNA polymerase, subunit 2 27 1355 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.