Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Biological Process | GO:0006351 | transcription, DNA-templated | Inferred from Sequence or Structural Similarity | ECO:0000250 sequence similarity evidence used in manual assertion |
6266829 | Reviewed by curator |
Biological Process | GO:0006351 | transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0032549 | ribonucleoside binding |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR20856
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.40.270.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | pae03020 | RNA polymerase | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae00240 | Pyrimidine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae00230 | Purine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | pae01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
FunFam | G3DSA:3.90.1110.10:FF:000004 | DNA-directed RNA polymerase subunit beta | - | - | 343 | 451 | 1.1E-51 |
Gene3D | G3DSA:3.90.1800.10 | RNA polymerase alpha subunit dimerisation domain | - | - | 1267 | 1320 | 2.5E-15 |
Pfam | PF04565 | RNA polymerase Rpb2, domain 3 | IPR007645 | RNA polymerase Rpb2, domain 3 | 518 | 585 | 4.9E-30 |
FunFam | G3DSA:3.90.1110.10:FF:000001 | DNA-directed RNA polymerase subunit beta | - | - | 157 | 272 | 4.4E-45 |
Pfam | PF10385 | RNA polymerase beta subunit external 1 domain | IPR019462 | DNA-directed RNA polymerase, beta subunit, external 1 domain | 596 | 661 | 2.4E-20 |
SUPERFAMILY | SSF64484 | beta and beta-prime subunits of DNA dependent RNA-polymerase | - | - | 11 | 1357 | 0.0 |
Gene3D | G3DSA:2.40.270.10 | - | IPR037033 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily | 1055 | 1257 | 2.0E-79 |
Gene3D | G3DSA:3.90.1110.10 | RNA polymerase Rpb2, domain 2 | IPR037034 | RNA polymerase Rpb2, domain 2 superfamily | 302 | 446 | 1.0E-32 |
Pfam | PF04563 | RNA polymerase beta subunit | IPR007644 | RNA polymerase, beta subunit, protrusion | 26 | 504 | 8.9E-41 |
PANTHER | PTHR20856 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 | IPR015712 | DNA-directed RNA polymerase, subunit 2 | 600 | 1353 | 0.0 |
NCBIfam | TIGR02013 | JCVI: DNA-directed RNA polymerase subunit beta | IPR010243 | DNA-directed RNA polymerase beta subunit, bacterial-type | 8 | 1354 | 0.0 |
Pfam | PF04560 | RNA polymerase Rpb2, domain 7 | IPR007641 | RNA polymerase Rpb2, domain 7 | 1281 | 1356 | 6.2E-27 |
FunFam | G3DSA:2.40.50.150:FF:000001 | DNA-directed RNA polymerase subunit beta | - | - | 838 | 943 | 6.4E-59 |
Gene3D | G3DSA:3.90.1100.10 | - | - | - | 447 | 718 | 1.8E-80 |
Gene3D | G3DSA:6.10.140.1670 | - | - | - | 949 | 1054 | 3.3E-28 |
FunFam | G3DSA:3.90.1800.10:FF:000001 | DNA-directed RNA polymerase subunit beta | - | - | 1267 | 1320 | 5.5E-36 |
Pfam | PF00562 | RNA polymerase Rpb2, domain 6 | IPR007120 | DNA-directed RNA polymerase, subunit 2, hybrid-binding domain | 722 | 1279 | 0.0 |
Gene3D | G3DSA:2.40.50.150 | - | IPR014724 | RNA polymerase Rpb2, OB-fold | 822 | 948 | 9.3E-20 |
Pfam | PF04561 | RNA polymerase Rpb2, domain 2 | IPR007642 | RNA polymerase Rpb2, domain 2 | 359 | 459 | 1.1E-14 |
Pfam | PF04561 | RNA polymerase Rpb2, domain 2 | IPR007642 | RNA polymerase Rpb2, domain 2 | 156 | 227 | 1.9E-8 |
FunFam | G3DSA:2.40.50.100:FF:000006 | DNA-directed RNA polymerase subunit beta | - | - | 721 | 802 | 3.1E-40 |
Gene3D | G3DSA:3.90.1100.10 | - | - | - | 18 | 178 | 6.8E-48 |
Hamap | MF_01321 | DNA-directed RNA polymerase subunit beta [rpoB]. | IPR010243 | DNA-directed RNA polymerase beta subunit, bacterial-type | 13 | 1357 | 12.348915 |
Gene3D | G3DSA:2.40.50.100 | - | - | - | 719 | 800 | 2.0E-30 |
Gene3D | G3DSA:2.30.150.10 | - | IPR042107 | DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily | 595 | 661 | 3.0E-22 |
CDD | cd00653 | RNA_pol_B_RPB2 | IPR015712 | DNA-directed RNA polymerase, subunit 2 | 27 | 1355 | 0.0 |