Pseudomonas aeruginosa PAO1, PA4763 (recN)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0071479 cellular response to ionizing radiation
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
6092851 Reviewed by curator
Biological Process GO:0009432 SOS response
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
2997124 Reviewed by curator
Biological Process GO:0000724 double-strand break repair via homologous recombination
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
2993876 Reviewed by curator
Biological Process GO:0006259 DNA metabolic process
ISS
Inferred from Sequence or Structural Similarity
ECO:0000044
sequence similarity evidence
Biological Process GO:0006302 double-strand break repair
ISS
Inferred from Sequence or Structural Similarity
ECO:0000250
sequence similarity evidence used in manual assertion
6092851 Reviewed by curator
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00634
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00634
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00634
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other PAO1 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd03241 ABC_RecN - - 2 147 1.65731E-58
Coils Coil Coil - - 193 230 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 217 9.03E-64
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 2 511 1.08E-26
PIRSF PIRSF003128 RecN IPR004604 DNA recombination/repair protein RecN 1 558 0.0
FunFam G3DSA:3.40.50.300:FF:000356 DNA repair protein RecN - - 271 554 2.3E-103
Coils Coil Coil - - 350 370 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 260 1.9E-61
PANTHER PTHR11059 DNA REPAIR PROTEIN RECN IPR004604 DNA recombination/repair protein RecN 2 553 0.0
NCBIfam TIGR00634 JCVI: DNA repair protein RecN IPR004604 DNA recombination/repair protein RecN 1 553 0.0
CDD cd03241 ABC_RecN - - 408 537 3.27953E-58
FunFam G3DSA:3.40.50.300:FF:000319 DNA repair protein RecN - - 1 256 4.7E-89
Coils Coil Coil - - 156 176 -
Pfam PF02463 RecF/RecN/SMC N terminal domain IPR003395 RecF/RecN/SMC, N-terminal 8 510 1.6E-15
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 271 554 2.0E-73

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.