Pseudomonas aeruginosa PAO1, PA5337 (rpoZ)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0046316	gluconokinase activity	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Biological Process	GO:0016070	RNA metabolic process	ISS Inferred from Sequence or Structural Similarity	ECO:0000044 sequence similarity evidence
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF63562	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006351	transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF63562	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF63562	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other PAO1 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pae01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae03020	RNA polymerase	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae00230	Purine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pae00240	Pyrimidine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Hamap	MF_00366	DNA-directed RNA polymerase subunit omega [rpoZ].	IPR003716	DNA-directed RNA polymerase, omega subunit	1	62	17.791557
SUPERFAMILY	SSF63562	RPB6/omega subunit-like	IPR036161	RPB6/omega subunit-like superfamily	1	77	2.79E-25
Gene3D	G3DSA:3.90.940.10	-	IPR036161	RPB6/omega subunit-like superfamily	2	86	1.2E-27
PANTHER	PTHR34476	DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA	IPR003716	DNA-directed RNA polymerase, omega subunit	1	87	5.3E-25
NCBIfam	TIGR00690	JCVI: DNA-directed RNA polymerase subunit omega	IPR003716	DNA-directed RNA polymerase, omega subunit	1	59	2.8E-22
Pfam	PF01192	RNA polymerase Rpb6	IPR006110	RNA polymerase, subunit omega/Rpo6/RPB6	8	59	3.0E-19
SMART	SM01409	RNA_pol_Rpb6_2	IPR006110	RNA polymerase, subunit omega/Rpo6/RPB6	8	61	4.8E-17

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.