Pseudomonas aeruginosa PAO1, PA5471 (armZ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0032411 positive regulation of transporter activity
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 16484195 Reviewed by curator
Biological Process GO:0046677 response to antibiotic
EXP
Inferred from Experiment 		ECO:0000269
experimental evidence used in manual assertion		 16484195 Reviewed by curator
Biological Process GO:0042493 response to drug
EXP
Inferred from Experiment 		ECO:0000269
experimental evidence used in manual assertion		 16484195 Reviewed by curator
Molecular Function GO:0008452 RNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.1860.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.1860.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Antibiotic resistance and susceptibility Other PAO1 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
PseudoCAP MexXY efflux pump related aminoglycoside resistance ECO:0000037
not_recorded
KEGG pae01501 beta-Lactam resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03073 JCVI: RNA ligase RtcB family protein, release factor H-associated IPR017510 Release factor H-coupled RctB family protein 12 367 0.0
SUPERFAMILY SSF103365 Hypothetical protein PH1602 IPR036025 tRNA-splicing ligase RtcB-like superfamily 8 372 2.22E-103
Gene3D G3DSA:3.90.1860.10 - IPR036025 tRNA-splicing ligase RtcB-like superfamily 11 372 5.7E-89
Pfam PF01139 tRNA-splicing ligase RtcB IPR001233 RNA-splicing ligase, RtcB 29 97 6.4E-9
Pfam PF01139 tRNA-splicing ligase RtcB IPR001233 RNA-splicing ligase, RtcB 125 372 9.0E-56
PANTHER PTHR11118 UNCHARACTERIZED IPR001233 RNA-splicing ligase, RtcB 21 98 4.5E-75

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.