Pseudomonas fluorescens Pf0-1, Pfl01_0079

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0022900 electron transport chain
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02790
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004129 cytochrome-c oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR22888
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13442
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13442
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02790
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfo01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfo00190 Oxidative phosphorylation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 224 241 1.7E-38
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 221 358 6.35E-23
Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain IPR011759 Cytochrome C oxidase subunit II, transmembrane domain 22 104 1.4E-12
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 186 206 1.7E-38
Gene3D G3DSA:1.10.287.90 - IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 36 113 1.6E-78
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 162 183 1.7E-38
PANTHER PTHR22888 CYTOCHROME C OXIDASE, SUBUNIT II IPR045187 Cytochrome c/quinol oxidase subunit II 18 259 1.5E-78
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 115 134 1.7E-38
Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain IPR002429 Cytochrome c oxidase subunit II-like C-terminal 121 240 2.8E-36
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 276 348 6.1E-12
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 114 252 1.6E-78
FunFam G3DSA:1.10.287.90:FF:000009 Cytochrome c oxidase subunit 2 - - 37 113 9.3E-40
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 256 375 2.0E-27
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 93 113 1.7E-38
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 81 93 1.7E-38
NCBIfam TIGR02866 JCVI: cytochrome c oxidase subunit II IPR014222 Cytochrome c oxidase, subunit II 32 251 8.4E-56
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 206 223 1.7E-38
SUPERFAMILY SSF81464 Cytochrome c oxidase subunit II-like, transmembrane region IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 19 113 3.27E-23
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 116 257 3.04E-53

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.