Pseudomonas fluorescens Pf0-1, Pfl01_4666 (gcbC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:1900192 positive regulation of single-species biofilm formation
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 21764921 Reviewed by curator
Biological Process GO:2000146 negative regulation of cell motility
IMP
Inferred from Mutant Phenotype 		ECO:0000315
mutant phenotype evidence used in manual assertion		 21764921 Reviewed by curator

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 41 194 1.7E-27
SMART SM00267 duf1_3 IPR000160 GGDEF domain 328 501 2.0E-72
Gene3D G3DSA:3.30.450.20 PAS domain - - 197 287 9.7E-19
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 340 501 2.2E-60
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 334 501 2.8E-55
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 335 500 3.2E-52
CDD cd12915 PDC2_DGC_like - - 198 296 7.87819E-18
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 339 497 9.2E-50
Coils Coil Coil - - 321 341 -
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 46 285 3.1E-13
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 344 500 1.73E-48
CDD cd12914 PDC1_DGC_like - - 69 196 1.44471E-19
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 323 501 6.4E-70
CDD cd01949 GGDEF IPR000160 GGDEF domain 341 499 2.40558E-65

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.