Pseudomonas fluorescens Pf0-1, Pfl01_5643

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 439 546 5.41E-23
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 318 425 2.79E-17
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 412 986 0.0
SMART SM00086 pac_2 IPR001610 PAC motif 383 426 6.2E-8
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 558 718 8.0E-29
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 436 554 7.0E-15
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 732 987 1.5E-92
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 736 984 4.97E-90
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 564 723 4.16E-40
SMART SM00091 pas_2 IPR000014 PAS domain 434 500 1.4E-4
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 558 733 1.5E-47
Pfam PF13426 PAS domain IPR000014 PAS domain 445 546 1.7E-13
Pfam PF08447 PAS fold IPR013655 PAS fold-3 336 419 8.7E-22
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 559 716 2.3E-39
Coils Coil Coil - - 725 745 -
CDD cd00130 PAS IPR000014 PAS domain 443 545 1.47389E-7
SMART SM00052 duf2_2 IPR001633 EAL domain 731 977 1.7E-120
Gene3D G3DSA:3.30.450.20 PAS domain - - 301 422 1.1E-33
Pfam PF00563 EAL domain IPR001633 EAL domain 737 972 2.6E-73
Gene3D G3DSA:3.30.450.20 PAS domain - - 431 557 2.4E-28
SMART SM00091 pas_2 IPR000014 PAS domain 309 376 21.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 335 431 1.5E-7
CDD cd01948 EAL IPR001633 EAL domain 737 975 8.63628E-112
CDD cd00130 PAS IPR000014 PAS domain 321 423 2.47125E-9
Coils Coil Coil - - 244 278 -
SMART SM00267 duf1_3 IPR000160 GGDEF domain 548 721 3.7E-49
SMART SM00086 pac_2 IPR001610 PAC motif 506 548 0.002
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 734 988 1.7E-102
CDD cd01949 GGDEF IPR000160 GGDEF domain 560 719 2.11934E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.