Pseudomonas fluorescens F113, PSF113_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01059
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.50.670
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 720 781 5.6E-30
PRINTS PR00418 DNA topoisomerase II family signature - - 408 422 2.5E-71
NCBIfam TIGR01059 JCVI: DNA gyrase subunit B IPR011557 DNA gyrase, subunit B 2 791 0.0
PRINTS PR00418 DNA topoisomerase II family signature - - 475 491 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 362 382 1.1E-70
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 687 790 2.1E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 745 757 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 169 184 1.1E-70
Gene3D G3DSA:3.10.20.690 - - - 580 670 1.1E-25
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 407 518 4.0E-17
FunFam G3DSA:3.30.230.10:FF:000005 DNA gyrase subunit B - - 208 380 2.8E-78
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 21 161 1.4E-21
Gene3D G3DSA:3.40.50.670 - IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 387 567 1.2E-67
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 406 520 3.23374E-77
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1 208 1.1E-89
SMART SM00433 topII5 IPR001241 DNA topoisomerase, type IIA 24 785 0.0
CDD cd00822 TopoII_Trans_DNA_gyrase - - 208 365 4.01345E-73
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 552 717 1.2E-53
PRINTS PR00418 DNA topoisomerase II family signature - - 102 116 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 761 777 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 458 467 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 184 197 1.1E-70
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2 206 8.12E-72
PRINTS PR00418 DNA topoisomerase II family signature - - 256 269 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 300 316 1.1E-70
PRINTS PR00418 DNA topoisomerase II family signature - - 59 72 2.5E-71
FunFam G3DSA:3.40.50.670:FF:000004 DNA gyrase subunit B - - 692 791 1.3E-48
PRINTS PR00418 DNA topoisomerase II family signature - - 24 39 2.5E-71
FunFam G3DSA:3.30.565.10:FF:000002 DNA gyrase subunit B - - 1 207 9.3E-91
SUPERFAMILY SSF56719 Type II DNA topoisomerase IPR013760 DNA topoisomerase, type IIA-like domain superfamily 382 782 1.57E-87
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 208 230 1.1E-70
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 1 792 98.791237
CDD cd16928 HATPase_GyrB-like - - 25 204 4.54956E-106
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 209 380 2.09E-58
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 20 164 4.4E-28
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 209 378 8.2E-56
PRINTS PR00418 DNA topoisomerase II family signature - - 513 525 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 348 362 1.1E-70
FunFam G3DSA:3.40.50.670:FF:000005 DNA gyrase subunit B - - 379 579 9.6E-122
Gene3D G3DSA:3.30.230.10 - IPR014721 Small ribosomal subunit protein uS5 domain 2-type fold, subgroup 209 386 4.1E-66
PANTHER PTHR45866 DNA GYRASE/TOPOISOMERASE SUBUNIT B - - 1 791 0.0
PRINTS PR00418 DNA topoisomerase II family signature - - 493 510 2.5E-71
PRINTS PR00418 DNA topoisomerase II family signature - - 724 740 2.5E-71

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.