Pseudomonas fluorescens F113, PSF113_0004 (gyrB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005694 chromosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01059
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00433
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS50880 Toprim domain profile. IPR006171 TOPRIM domain 406 521 21.618
CDD cd00822 TopoII_Trans_DNA_gyrase 208 365 3.31242E-73
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 208 230 1.1E-70
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 209 380 2.09E-58
SUPERFAMILY SSF56719 IPR013760 DNA topoisomerase, type IIA-like domain superfamily 382 782 1.57E-87
Gene3D G3DSA:3.40.50.670 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 692 790 1.2E-26
PRINTS PR00418 DNA topoisomerase II family signature 513 525 2.5E-71
PRINTS PR00418 DNA topoisomerase II family signature 493 510 2.5E-71
SMART SM00433 IPR001241 DNA topoisomerase, type IIA 24 785 0.0
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 184 197 1.1E-70
PRINTS PR00418 DNA topoisomerase II family signature 475 491 2.5E-71
ProSitePatterns PS00177 DNA topoisomerase II signature. IPR018522 DNA topoisomerase, type IIA, conserved site 410 418 -
SUPERFAMILY SSF55874 IPR036890 Histidine kinase/HSP90-like ATPase superfamily 2 206 8.12E-72
Pfam PF00204 DNA gyrase B IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 209 378 6.9E-56
Gene3D G3DSA:3.30.230.10 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup 208 383 1.2E-68
Pfam PF00986 DNA gyrase B subunit, carboxyl terminus IPR002288 DNA gyrase B subunit, C-terminal 720 781 6.6E-30
PRINTS PR00418 DNA topoisomerase II family signature 408 422 2.5E-71
Hamap MF_01898 DNA gyrase subunit B [gyrB]. IPR011557 DNA gyrase, subunit B 1 792 98.791
CDD cd16928 HATPase_GyrB-like 25 204 3.75489E-106
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 761 777 1.1E-70
PRINTS PR00418 DNA topoisomerase II family signature 724 740 2.5E-71
Pfam PF18053 DNA gyrase B subunit insert domain IPR041423 DNA gyrase subunit B insert domain 552 717 5.3E-55
Gene3D G3DSA:3.30.565.10 IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1 207 2.9E-88
CDD cd03366 TOPRIM_TopoIIA_GyrB IPR034160 DNA gyrase subunit B, TOPRIM domain 406 520 2.6689E-77
PRINTS PR00418 DNA topoisomerase II family signature 59 72 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 458 467 1.1E-70
Gene3D G3DSA:3.10.20.690 580 671 1.4E-18
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 21 161 2.5E-21
Pfam PF01751 Toprim domain IPR006171 TOPRIM domain 407 518 5.1E-17
PRINTS PR00418 DNA topoisomerase II family signature 102 116 2.5E-71
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 169 184 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 362 382 1.1E-70
TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit IPR011557 DNA gyrase, subunit B 2 791 0.0
Gene3D G3DSA:3.40.50.670 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal 384 560 2.6E-73
PRINTS PR00418 DNA topoisomerase II family signature 24 39 2.5E-71
PRINTS PR00418 DNA topoisomerase II family signature 256 269 2.5E-71
SMART SM00387 IPR003594 Histidine kinase/HSP90-like ATPase 20 164 4.4E-28
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 745 757 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 348 362 1.1E-70
PRINTS PR01159 DNA gyrase subunit B signature IPR000565 DNA topoisomerase, type IIA, subunit B 300 316 1.1E-70

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.