Pseudomonas fluorescens F113, PSF113_0005 (gabP)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00324
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015185 gamma-aminobutyric acid transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01773
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00324
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015812 gamma-aminobutyric acid transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01773
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00324 Amino acid permease IPR004841 Amino acid permease/ SLC12A domain 18 446 3.0E-112
PIRSF PIRSF006060 AA_transporter - - 1 463 7.2E-75
NCBIfam TIGR01773 JCVI: GABA permease IPR011265 GABA permease 1 451 0.0
PANTHER PTHR43495 GABA PERMEASE - - 4 453 0.0
Gene3D G3DSA:1.20.1740.10 Amino acid/polyamine transporter I - - 10 459 1.8E-85
FunFam G3DSA:1.20.1740.10:FF:000001 Amino acid permease - - 9 456 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.