Pseudomonas fluorescens F113, PSF113_0499

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00065
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 345 464 1.1E-13
Pfam PF13426 PAS domain IPR000014 PAS domain 355 457 3.2E-13
SMART SM00091 pas_2 IPR000014 PAS domain 344 411 8.8E-5
CDD cd00130 PAS IPR000014 PAS domain 353 455 1.01242E-7
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 154 342 2.7E-16
Pfam PF00563 EAL domain IPR001633 EAL domain 643 878 1.0E-73
SMART SM00065 gaf_1 IPR003018 GAF domain 192 341 2.5E-4
CDD cd01948 EAL IPR001633 EAL domain 643 883 6.22066E-100
CDD cd01949 GGDEF IPR000160 GGDEF domain 470 625 1.16296E-53
SMART SM00052 duf2_2 IPR001633 EAL domain 637 883 4.6E-112
Coils Coil Coil - - 144 164 -
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 468 638 2.6E-50
SMART SM00086 pac_2 IPR001610 PAC motif 416 458 7.7E-4
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 469 622 6.3E-39
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 253 886 0.0
SMART SM00091 pas_2 IPR000014 PAS domain 24 87 45.0
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 474 628 1.18E-41
Pfam PF01590 GAF domain IPR003018 GAF domain 193 331 1.8E-11
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 639 892 1.1E-99
SMART SM00267 duf1_3 IPR000160 GGDEF domain 458 627 3.7E-55
SUPERFAMILY SSF55781 GAF domain-like - - 195 338 2.18E-19
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 465 626 1.1E-33
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 642 891 4.58E-90
Gene3D G3DSA:3.30.450.20 PAS domain - - 343 467 1.3E-25
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 350 456 2.09E-19
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 638 893 9.9E-97

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.