Pseudomonas fluorescens F113, PSF113_1070 (recJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00644
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00644
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02272
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008409 5'-3' exonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00644
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe03430 Mismatch repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.90.1640.30:FF:000001 Single-stranded-DNA-specific exonuclease RecJ - - 46 320 6.0E-125
Pfam PF01368 DHH family IPR001667 DDH domain 69 226 1.3E-19
PANTHER PTHR30255 SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ - - 18 568 0.0
Gene3D G3DSA:3.90.1640.30 - - - 45 320 2.8E-87
Pfam PF17768 RecJ OB domain IPR041122 RecJ, OB domain 461 564 2.0E-18
NCBIfam TIGR00644 JCVI: single-stranded-DNA-specific exonuclease RecJ IPR004610 Bacterial RecJ exonuclease 20 565 0.0
Pfam PF02272 DHHA1 domain IPR003156 DHHA1 domain 316 444 5.2E-23
SUPERFAMILY SSF64182 DHH phosphoesterases IPR038763 DHH phosphoesterase superfamily 44 457 4.58E-117
Gene3D G3DSA:3.10.310.30 - - - 321 448 3.2E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.