Pseudomonas fluorescens F113, PSF113_1077 (potC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:cd06261
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pfe02024 | Quorum sensing | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00528 | Binding-protein-dependent transport system inner membrane component | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 72 | 239 | 6.5E-13 |
| SUPERFAMILY | SSF161098 | MetI-like | IPR035906 | MetI-like superfamily | 9 | 242 | 1.44E-48 |
| CDD | cd06261 | TM_PBP2 | IPR000515 | ABC transporter type 1, transmembrane domain MetI-like | 56 | 241 | 1.70657E-13 |
| PANTHER | PTHR43848 | PUTRESCINE TRANSPORT SYSTEM PERMEASE PROTEIN POTI | - | - | 3 | 249 | 9.4E-59 |
| Gene3D | G3DSA:1.10.3720.10 | - | IPR035906 | MetI-like superfamily | 1 | 251 | 4.4E-40 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.