Pseudomonas fluorescens F113, PSF113_1206

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0035596 methylthiotransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00919
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006400 tRNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00089
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051536 iron-sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0018339 peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016740 transferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43837
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF04055
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.80.30.20:FF:000001 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 2 - - 141 383 4.7E-89
SFLD SFLDG01082 B12-binding domain containing - - 100 368 2.7E-28
SFLD SFLDF00274 ribosomal protein S12 methylthiotransferase (RimO-like) IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 8 444 0.0
SFLD SFLDG01061 methylthiotransferase IPR005839 Methylthiotransferase 8 444 0.0
SUPERFAMILY SSF102114 Radical SAM enzymes - - 112 374 8.89E-54
SMART SM00729 MiaB IPR006638 Elp3/MiaA/NifB-like, radical SAM core domain 143 369 1.2E-52
Pfam PF18693 TRAM domain IPR002792 TRAM domain 383 445 6.1E-22
FunFam G3DSA:2.40.50.140:FF:000060 Ribosomal protein S12 methylthiotransferase RimO - - 384 446 2.1E-26
CDD cd01335 Radical_SAM - - 147 348 1.65267E-11
Gene3D G3DSA:3.40.50.12160 - IPR038135 Methylthiotransferase, N-terminal domain superfamily 11 128 3.8E-27
Pfam PF00919 Uncharacterized protein family UPF0004 IPR013848 Methylthiotransferase, N-terminal 11 90 1.4E-20
Gene3D G3DSA:3.80.30.20 tm_1862 like domain IPR023404 Radical SAM, alpha/beta horseshoe 141 383 2.8E-71
NCBIfam TIGR00089 JCVI: MiaB/RimO family radical SAM methylthiotransferase IPR005839 Methylthiotransferase 11 442 3.0E-101
NCBIfam TIGR01125 JCVI: 30S ribosomal protein S12 methylthiotransferase RimO IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 11 441 0.0
Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 10 444 61.313919
Pfam PF04055 Radical SAM superfamily IPR007197 Radical SAM 149 326 3.7E-28
FunFam G3DSA:3.40.50.12160:FF:000002 Ribosomal protein S12 methylthiotransferase RimO - - 11 128 7.5E-54
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 384 445 8.4E-21
PANTHER PTHR43837 RIBOSOMAL PROTEIN S12 METHYLTHIOTRANSFERASE RIMO IPR005840 Ribosomal protein uS12 methylthiotransferase RimO 8 445 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.