Pseudomonas fluorescens F113, PSF113_1241

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004733 pyridoxamine-phosphate oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000190
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008615 pyridoxine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000190
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0010181 FMN binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000190
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055114 oxidation-reduction process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01064
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0048037 obsolete cofactor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.110.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS01064
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
MetaCyc pyridoxal 5'-phosphate salvage II (plants) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe00750 Vitamin B6 metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG (InterPro) 00750 Vitamin B6 metabolism InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfe01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50475 8 215 2.16E-65
TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase IPR000659 Pyridoxamine 5'-phosphate oxidase 4 215 1.6E-87
Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. IPR000659 Pyridoxamine 5'-phosphate oxidase 11 215 38.58
Gene3D G3DSA:2.30.110.10 IPR012349 FMN-binding split barrel 2 215 5.1E-83
PIRSF PIRSF000190 IPR000659 Pyridoxamine 5'-phosphate oxidase 1 215 1.2E-80
Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal 175 215 5.5E-19
Pfam PF01243 Pyridoxamine 5'-phosphate oxidase IPR011576 Pyridoxamine 5'-phosphate oxidase, putative 43 122 1.6E-26
ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site 185 198 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.