Pseudomonas fluorescens F113, PSF113_4776

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 332 496 3.4E-51
CDD cd12915 PDC2_DGC_like - - 196 292 1.73646E-23
Gene3D G3DSA:3.30.450.20 PAS domain - - 195 283 4.7E-21
CDD cd12914 PDC1_DGC_like - - 70 194 2.96445E-20
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 46 281 1.1E-14
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 322 497 2.4E-59
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 335 493 5.7E-49
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 340 496 4.71E-49
SMART SM00267 duf1_3 IPR000160 GGDEF domain 324 497 3.5E-68
Gene3D G3DSA:3.30.450.20 PAS domain - - 42 192 1.0E-28
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 313 497 5.0E-70
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 330 497 9.3E-53
CDD cd01949 GGDEF IPR000160 GGDEF domain 338 495 2.86276E-65

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.