Pseudomonas fluorescens F113, PSF113_5392
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 227 | 394 | 1.2E-27 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 232 | 400 | 1.65E-36 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 217 | 399 | 4.2E-41 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 228 | 397 | 3.88721E-39 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 217 | 400 | 2.2E-47 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 334 | 356 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 225 | 333 | 9.3E-23 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 218 | 402 | 2.1E-54 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.