Pseudomonas fluorescens F113, PSF113_5781 (recG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00643
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00643
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR47964
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR47964 ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC IPR047112 ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor 7 672 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 7 172 9.25E-37
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 265 458 2.3E-26
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 293 408 2.2E-17
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 503 587 5.7E-22
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 479 586 1.5E-16
CDD cd17992 DEXHc_RecG - - 224 451 7.3992E-113
CDD cd18811 SF2_C_RecG - - 456 613 4.71309E-75
NCBIfam TIGR00643 JCVI: ATP-dependent DNA helicase RecG IPR004609 ATP-dependent DNA helicase RecG 27 663 0.0
Pfam PF17191 RecG wedge domain IPR033454 RecG, wedge domain 12 171 3.0E-18
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 45 138 1.4E-10
CDD cd04488 RecG_wedge_OBF - - 61 134 2.59157E-21
FunFam G3DSA:3.40.50.300:FF:000391 ATP-dependent DNA helicase RecG - - 456 628 3.6E-93
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 456 628 2.5E-55
Pfam PF19833 ATP-dependent DNA helicase RecG, domain 3, C-terminal IPR045562 ATP-dependent DNA helicase RecG, domain 3, C-terminal 614 674 1.3E-14
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 209 448 4.0E-79
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 317 598 1.42E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.