Pseudomonas fluorescens F113, PSF113_5806 (clpB3)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07724
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0019538 protein metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF81923
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pfe02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 675 693 4.5E-30
SMART SM01086 IPR019489 Clp ATPase, C-terminal 798 890 1.3E-13
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 4.7E-9
ProSitePatterns PS00870 Chaperonins clpA/B signature 1. IPR018368 ClpA/B, conserved site 1 325 337 -
Gene3D G3DSA:3.40.50.300 579 796 3.6E-66
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 798 872 1.6E-13
TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family IPR017729 Type VI secretion system, ATPase ClpV1 13 882 0.0
Gene3D G3DSA:1.10.1780.10 IPR036628 Clp, N-terminal domain superfamily 1 161 7.3E-44
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 737 751 4.5E-30
CDD cd00009 AAA 600 748 2.34339E-15
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 630 648 4.5E-30
SMART SM00382 IPR003593 AAA+ ATPase domain 626 785 3.2E-8
SUPERFAMILY SSF81923 IPR036628 Clp, N-terminal domain superfamily 12 131 3.92E-18
Coils Coil 443 463 -
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 575 871 6.48E-63
Gene3D G3DSA:3.40.50.300 183 373 1.9E-63
Coils Coil 525 552 -
Gene3D G3DSA:3.40.50.300 375 573 1.2E-42
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 704 722 4.5E-30
Gene3D G3DSA:1.10.8.60 798 895 5.4E-12
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 552 8.62E-72
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 465 2.1E-28
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 625 791 2.1E-38
CDD cd00009 AAA 212 367 3.51461E-15
SMART SM00382 IPR003593 AAA+ ATPase domain 229 374 2.4E-10

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.