Pseudomonas fluorescens F113, PSF113_5807 (vgrG1a)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfe03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.1920.30 224 286 0.0
TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset 11 523 0.0
SUPERFAMILY SSF69279 189 362 4.08E-38
SUPERFAMILY SSF69279 11 184 2.21E-60
Gene3D G3DSA:3.55.50.10 98 189 0.0
Gene3D G3DSA:2.40.50.230 IPR037026 Vgr protein, OB-fold domain superfamily 355 457 1.1E-47
Pfam PF05954 Phage late control gene D protein (GPD) 30 329 1.2E-105
Gene3D G3DSA:2.30.110.50 14 331 0.0
TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein IPR006533 Type VI secretion system, RhsGE-associated Vgr protein 24 506 0.0
SUPERFAMILY SSF69255 364 452 6.28E-35
SUPERFAMILY SSF69349 442 617 1.33E-40

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.