Pseudomonas fluorescens SBW25, PFLU0058

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0022900 electron transport chain
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02790
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005507 copper ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009055 electron transfer activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004129 cytochrome-c oxidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00116
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0020037 heme binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.760.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016491 oxidoreductase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02866
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46626 Cytochrome c IPR036909 Cytochrome c-like domain superfamily 265 363 2.18E-22
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 206 223 1.5E-38
PANTHER PTHR22888 CYTOCHROME C OXIDASE, SUBUNIT II IPR045187 Cytochrome c/quinol oxidase subunit II 18 260 5.3E-78
SUPERFAMILY SSF81464 Cytochrome c oxidase subunit II-like, transmembrane region IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 19 111 9.65E-24
NCBIfam TIGR02866 JCVI: cytochrome c oxidase subunit II IPR014222 Cytochrome c oxidase, subunit II 32 251 6.2E-56
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 162 183 1.5E-38
Gene3D G3DSA:1.10.287.90 - IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily 37 113 1.6E-78
SUPERFAMILY SSF49503 Cupredoxins IPR008972 Cupredoxin 112 306 1.67E-52
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 224 241 1.5E-38
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 186 206 1.5E-38
Gene3D G3DSA:2.60.40.420 - IPR008972 Cupredoxin 114 251 1.6E-78
FunFam G3DSA:1.10.287.90:FF:000009 Cytochrome c oxidase subunit 2 - - 37 113 7.6E-40
Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain IPR011759 Cytochrome C oxidase subunit II, transmembrane domain 23 104 2.1E-12
Gene3D G3DSA:1.10.760.10 - IPR036909 Cytochrome c-like domain superfamily 256 375 2.1E-27
Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III IPR009056 Cytochrome c-like domain 274 348 7.5E-11
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 115 134 1.5E-38
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 81 93 1.5E-38
Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain IPR002429 Cytochrome c oxidase subunit II-like C-terminal 121 240 4.0E-37
PRINTS PR01166 Cytochrome c oxidase subunit II signature - - 93 113 1.5E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.