Pseudomonas fluorescens SBW25, PFLU0117

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.450.20 PAS domain - - 64 171 8.2E-65
SMART SM00304 HAMP_11 IPR003660 HAMP domain 295 349 1.3E-13
Gene3D G3DSA:1.10.287.950 - - - 296 626 4.2E-75
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 295 626 2.0E-97
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 317 626 1.28E-74
CDD cd11386 MCP_signal - - 391 590 1.33933E-55
SUPERFAMILY SSF103190 Sensory domain-like IPR029151 Periplasmic sensor-like domain superfamily 91 182 6.28E-11
Pfam PF00672 HAMP domain IPR003660 HAMP domain 293 345 1.1E-12
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 590 3.7E-43
CDD cd06225 HAMP - - 299 344 5.78258E-12
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 364 625 3.4E-85
CDD cd12912 PDC2_MCP_like - - 175 262 2.74236E-19
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 9 625 2.0E-112
Coils Coil Coil - - 600 620 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 53 268 8.2E-65
Pfam PF02743 Cache domain IPR033479 Double Cache domain 1 35 256 3.4E-28
CDD cd12913 PDC1_MCP_like - - 58 173 2.30376E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.