Pseudomonas fluorescens SBW25, PFLU0473
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56935 | Porins | - | - | 20 | 697 | 1.5E-108 |
| Gene3D | G3DSA:2.170.130.10 | - | IPR037066 | TonB-dependent receptor, plug domain superfamily | 24 | 165 | 1.7E-25 |
| Pfam | PF07715 | TonB-dependent Receptor Plug Domain | IPR012910 | TonB-dependent receptor, plug domain | 45 | 154 | 5.3E-19 |
| Pfam | PF00593 | TonB dependent receptor | IPR000531 | TonB-dependent receptor-like, beta-barrel | 223 | 696 | 1.1E-44 |
| CDD | cd01347 | ligand_gated_channel | - | - | 50 | 701 | 1.68113E-63 |
| PANTHER | PTHR30069 | TONB-DEPENDENT OUTER MEMBRANE RECEPTOR | IPR039426 | TonB-dependent receptor-like | 8 | 701 | 4.7E-80 |
| Gene3D | G3DSA:2.40.170.20 | - | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | 177 | 701 | 2.8E-82 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.