Pseudomonas fluorescens SBW25, PFLU1293 (ispD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0070567 cytidylyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01128
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008299 isoprenoid biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00108
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00900 Terpenoid backbone biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0
UniPathway UPA00056 isopentenyl diphosphate biosynthesis via DXP pathway InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00453 JCVI: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 227 5.2E-71
SUPERFAMILY SSF53448 Nucleotide-diphospho-sugar transferases IPR029044 Nucleotide-diphospho-sugar transferases 8 231 5.85E-55
FunFam G3DSA:3.90.550.10:FF:000003 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase - - 5 234 4.9E-70
Gene3D G3DSA:3.90.550.10 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A IPR029044 Nucleotide-diphospho-sugar transferases 4 233 6.2E-68
PANTHER PTHR32125 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, CHLOROPLASTIC - - 8 226 2.1E-54
CDD cd02516 CDP-ME_synthetase IPR034683 Cytidylyltransferase IspD/TarI 8 227 6.40336E-83
Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IPR034683 Cytidylyltransferase IspD/TarI 10 224 3.3E-64
Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 7 231 42.107807

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.