Pseudomonas fluorescens SBW25, PFLU1302 (rpoS)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00959	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
FunFam	G3DSA:1.10.10.10:FF:000044	RNA polymerase sigma factor RpoS	-	-	250	323	9.3E-40
FunFam	G3DSA:1.10.10.10:FF:000046	RNA polymerase sigma factor RpoS	-	-	172	248	1.9E-44
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	172	246	2.88E-14
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	249	324	2.4E-20
Hamap	MF_00959	RNA polymerase sigma factor RpoS [rpoS].	IPR012761	RNA polymerase sigma factor RpoS	2	333	40.33242
Gene3D	G3DSA:1.10.10.10	-	IPR036388	Winged helix-like DNA-binding domain superfamily	172	247	1.4E-15
CDD	cd06171	Sigma70_r4	-	-	262	319	8.39448E-10
NCBIfam	TIGR02394	JCVI: RNA polymerase sigma factor RpoS	IPR012761	RNA polymerase sigma factor RpoS	56	333	0.0
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	267	320	5.0E-14
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	179	253	2.5E-21
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	123	136	2.5E-26
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	147	155	2.5E-26
FunFam	G3DSA:1.10.601.10:FF:000001	RNA polymerase sigma factor SigA	-	-	91	171	1.1E-46
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	271	283	2.5E-26
SUPERFAMILY	SSF88946	Sigma2 domain of RNA polymerase sigma factors	IPR013325	RNA polymerase sigma factor, region 2	61	169	6.28E-45
Gene3D	G3DSA:1.10.601.10	RNA Polymerase Primary Sigma Factor	-	-	24	168	4.0E-47
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	292	307	2.5E-26
NCBIfam	TIGR02937	JCVI: sigma-70 family RNA polymerase sigma factor	IPR014284	RNA polymerase sigma-70 like domain	96	322	4.2E-34
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	307	318	2.5E-26
PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	-	-	95	328	2.6E-82
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	99	168	9.4E-22
Pfam	PF00140	Sigma-70 factor, region 1.2	IPR009042	RNA polymerase sigma-70 region 1.2	61	94	2.2E-12
SUPERFAMILY	SSF88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	IPR013324	RNA polymerase sigma factor, region 3/4-like	230	327	1.45E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.