Pseudomonas fluorescens SBW25, PFLU1312

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.10.3260.10
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 418 543 2.57E-29
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 218 413 2.9E-27
PANTHER PTHR45674 DNA LIGASE 1/3 FAMILY MEMBER - - 2 542 6.0E-58
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 213 413 1.6E-43
Coils Coil Coil - - 536 544 -
Gene3D G3DSA:1.10.3260.10 - IPR036599 DNA ligase, ATP-dependent, N-terminal domain superfamily 2 105 2.8E-9
NCBIfam TIGR04120 JCVI: cisplatin damage response ATP-dependent DNA ligase IPR026333 ATP-dependent DNA ligase, PP_1105 family 2 543 0.0
Pfam PF04675 DNA ligase N terminus IPR012308 DNA ligase, ATP-dependent, N-terminal 2 161 4.4E-17
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 434 528 9.9E-10
CDD cd07897 Adenylation_DNA_ligase_Bac1 - - 207 417 5.62997E-114
CDD cd07972 OBF_DNA_ligase_Arch_LigB - - 418 540 1.18228E-59
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 216 413 9.92E-55
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 417 544 1.8E-29

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.