Pseudomonas fluorescens SBW25, PFLU5611 (bioD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009102 biotin biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000287 magnesium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004141 dethiobiotin synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006755
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
UniPathway UPA00078 biotin biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0
KEGG (InterPro) 00780 Biotin metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion 		0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF13500 AAA domain - - 5 213 1.4E-38
CDD cd03109 DTBS - - 4 195 5.74545E-68
Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. IPR004472 Dethiobiotin synthase BioD 2 214 28.907944
PIRSF PIRSF006755 DTB_synth IPR004472 Dethiobiotin synthase BioD 1 225 3.3E-74
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 3 225 1.4E-72
NCBIfam TIGR00347 JCVI: dethiobiotin synthase IPR004472 Dethiobiotin synthase BioD 6 177 3.8E-44
PANTHER PTHR43210 DETHIOBIOTIN SYNTHETASE IPR004472 Dethiobiotin synthase BioD 1 221 2.6E-61
FunFam G3DSA:3.40.50.300:FF:000292 ATP-dependent dethiobiotin synthetase BioD - - 3 225 2.9E-81
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 1 219 5.32E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.