Pseudomonas fluorescens SBW25, PFLU5627
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens SBW25
GCF_000009225.2|latest |
| Locus Tag |
PFLU5627
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 6167161 - 6167679 (+ strand) |
Cross-References
| RefSeq | YP_002875121.1 |
| GI | 229593002 |
| Entrez | 7817167 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RNA polymerase sigma factor
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 2.89 |
| Kyte-Doolittle Hydrophobicity Value | -0.272 |
| Molecular Weight (kDa) | 19.7 |
| Isoelectric Point (pI) | 8.67 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 164 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000463 (1798 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLU5627
Search term: RNA polymerase sigma factor
|
Human Homologs
References
No references are associated with this feature.