Pseudomonas fluorescens SBW25, PFLU5989

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008311 double-stranded DNA 3'-5' exodeoxyribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43250
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00633
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03372
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF56219 DNase I-like IPR036691 Endonuclease/exonuclease/phosphatase superfamily 1 254 4.58E-54
CDD cd10281 Nape_like_AP-endo - - 1 253 0.0
PANTHER PTHR43250 - IPR037493 Exodeoxyribonuclease III-like 1 254 2.9E-34
FunFam G3DSA:3.60.10.10:FF:000001 Exodeoxyribonuclease III - - 1 259 0.0
Pfam PF03372 Endonuclease/Exonuclease/phosphatase family IPR005135 Endonuclease/exonuclease/phosphatase 5 240 1.7E-12
Gene3D G3DSA:3.60.10.10 Endonuclease/exonuclease/phosphatase IPR036691 Endonuclease/exonuclease/phosphatase superfamily 1 259 3.9E-67
NCBIfam TIGR00633 JCVI: exodeoxyribonuclease III IPR004808 AP endonuclease 1 1 253 3.1E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.