Pseudomonas fluorescens SBW25, PFLU5989

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5989
Name
Replicon chromosome
Genomic location 6545524 - 6546303 (+ strand)

Cross-References

RefSeq YP_002875473.1
GI 229593354
Entrez 7819071
INSDC CAY53517.1
UniParc UPI000056E930
UniProtKB Acc C3K477
UniProtKB ID C3K477_PSEFS
UniRef100 UniRef100_Q49P76
UniRef50 UniRef50_Q49P76
UniRef90 UniRef90_Q49P76

Product

Feature Type CDS
Coding Frame 1
Product Name
putative exodeoxyribonuclease III
Synonyms
Evidence for Translation
Charge (pH 7) -4.85
Kyte-Doolittle Hydrophobicity Value -0.445
Molecular Weight (kDa) 29.9
Isoelectric Point (pI) 4.87

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2MYI RNA BINDING PROTEIN 01/25/15 Solution Structure of Crc from P. syringae Lz4W Pseudomonas sp. Lz4W NOT SOLUTION NMR 98.1

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 507 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004901 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5989

Human Homologs

References

No references are associated with this feature.