Pseudomonas fluorescens SBW25, PFLU5991 (rph)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0009022 tRNA nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00564
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00564
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000049 tRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00564
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR11953 EXOSOME COMPLEX COMPONENT - - 3 235 4.9E-47
Pfam PF01138 3' exoribonuclease family, domain 1 IPR001247 Exoribonuclease, phosphorolytic domain 1 11 141 2.8E-26
NCBIfam TIGR01966 JCVI: ribonuclease PH IPR002381 Ribonuclease PH, bacterial-type 3 238 3.0E-111
Pfam PF03725 3' exoribonuclease family, domain 2 IPR015847 Exoribonuclease, phosphorolytic domain 2 160 226 6.5E-10
SUPERFAMILY SSF55666 Ribonuclease PH domain 2-like IPR036345 Exoribonuclease, PH domain 2 superfamily 153 238 1.18E-25
FunFam G3DSA:3.30.230.70:FF:000003 Ribonuclease PH - - 10 239 5.3E-113
Hamap MF_00564 Ribonuclease PH [rph]. IPR002381 Ribonuclease PH, bacterial-type 15 239 44.98774
CDD cd11362 RNase_PH_bact IPR002381 Ribonuclease PH, bacterial-type 11 238 0.0
Gene3D G3DSA:3.30.230.70 - IPR027408 PNPase/RNase PH domain superfamily 10 240 2.4E-73
SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like IPR020568 Ribosomal protein uS5 domain 2-type superfamily 2 183 1.16E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.