Pseudomonas fluorescens SBW25, PFLU5994 (rpoZ)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006351 | transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34476
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR34476
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.90.940.10
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG (InterPro) | 00240 | Pyrimidine metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
| KEGG (InterPro) | 00230 | Purine metabolism | InterPro 5.8-49.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
0 |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SMART | SM01409 | RNA_pol_Rpb6_2 | IPR006110 | RNA polymerase, subunit omega/Rpo6/RPB6 | 8 | 61 | 1.9E-17 |
| Pfam | PF01192 | RNA polymerase Rpb6 | IPR006110 | RNA polymerase, subunit omega/Rpo6/RPB6 | 8 | 60 | 8.2E-20 |
| PANTHER | PTHR34476 | DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA | IPR003716 | DNA-directed RNA polymerase, omega subunit | 1 | 85 | 2.0E-24 |
| NCBIfam | TIGR00690 | JCVI: DNA-directed RNA polymerase subunit omega | IPR003716 | DNA-directed RNA polymerase, omega subunit | 1 | 60 | 5.8E-24 |
| SUPERFAMILY | SSF63562 | RPB6/omega subunit-like | IPR036161 | RPB6/omega subunit-like superfamily | 1 | 81 | 4.01E-26 |
| Gene3D | G3DSA:3.90.940.10 | - | IPR036161 | RPB6/omega subunit-like superfamily | 2 | 86 | 1.0E-28 |
| Hamap | MF_00366 | DNA-directed RNA polymerase subunit omega [rpoZ]. | IPR003716 | DNA-directed RNA polymerase, omega subunit | 1 | 62 | 18.010529 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.