Pseudomonas fluorescens SBW25, PFLU5996

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens SBW25
GCF_000009225.2|latest
Locus Tag
PFLU5996
Name
Replicon chromosome
Genomic location 6551789 - 6552169 (+ strand)

Cross-References

RefSeq YP_002875480.1
GI 229593361
Entrez 7822174
INSDC CAY53528.1
UniParc UPI00019DB078
UniProtKB Acc C3K484
UniProtKB ID C3K484_PSEFS
UniRef100 UniRef100_A0A0D0TN96
UniRef50 UniRef50_A0A0B7DKC4
UniRef90 UniRef90_A0A0B7DKC4

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -2.77
Kyte-Doolittle Hydrophobicity Value 0.151
Molecular Weight (kDa) 13.5
Isoelectric Point (pI) 4.82

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
3K0T SUGAR BINDING PROTEIN 09/25/09 Crystal structure of PSPTO -PSP protein in complex with D-beta-Glucose from Pseudomonas syringae pv. tomato str. DC3000 Pseudomonas syringae pv. tomato 2.1 X-RAY DIFFRACTION 91.9

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 542 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004908 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFLU5996

Human Homologs

Ensembl 110, assembly GRCh38.p14
reactive intermediate imine deaminase A homolog [Source:HGNC Symbol;Acc:HGNC:16897]
E-value: 4.2e-24
Percent Identity: 44.0

References

No references are associated with this feature.