Pseudomonas fluorescens SBW25, PFLU6003 (recG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR47964
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00643
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00270
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003678 DNA helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00643
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd17992 DEXHc_RecG - - 224 451 1.12563E-110
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 45 138 6.5E-11
SMART SM00487 ultradead3 IPR014001 Helicase superfamily 1/2, ATP-binding domain 265 458 7.7E-27
FunFam G3DSA:3.40.50.300:FF:000391 ATP-dependent DNA helicase RecG - - 456 628 4.2E-93
Pfam PF17191 RecG wedge domain IPR033454 RecG, wedge domain 12 171 2.0E-18
SMART SM00490 helicmild6 IPR001650 Helicase, C-terminal 503 587 2.0E-22
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 317 598 8.5E-56
CDD cd04488 RecG_wedge_OBF - - 61 134 3.82555E-21
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 456 628 3.5E-55
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 7 171 1.03E-35
Pfam PF00271 Helicase conserved C-terminal domain IPR001650 Helicase, C-terminal 480 586 1.0E-16
Pfam PF19833 ATP-dependent DNA helicase RecG, domain 3, C-terminal IPR045562 ATP-dependent DNA helicase RecG, domain 3, C-terminal 614 676 7.3E-15
NCBIfam TIGR00643 JCVI: ATP-dependent DNA helicase RecG IPR004609 ATP-dependent DNA helicase RecG 27 663 0.0
Pfam PF00270 DEAD/DEAH box helicase IPR011545 DEAD/DEAH box helicase domain 293 430 1.6E-18
CDD cd18811 SF2_C_RecG - - 456 613 7.7525E-76
PANTHER PTHR47964 ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC IPR047112 ATP-dependent DNA helicase RecG/Transcription-repair-coupling factor 7 672 0.0
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 209 448 1.2E-79

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.