Pseudomonas fluorescens SBW25, PFLU6014
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR03350 | JCVI: type VI secretion system protein TssL C-terminal extension domain | IPR017733 | Type VI secretion system, OmpA-like domain, proteobacteria | 287 | 423 | 1.5E-50 |
| Gene3D | G3DSA:3.30.1330.60 | - | IPR036737 | OmpA-like domain superfamily | 276 | 428 | 1.9E-40 |
| NCBIfam | TIGR03349 | JCVI: DotU/TssL family secretion system protein | IPR017732 | Type IV / VI secretion system, DotU | 46 | 255 | 1.4E-73 |
| NCBIfam | NF038228 | NCBIFAM: type IVB secretion system protein IcmH/DotU | - | - | 42 | 261 | 1.8E-46 |
| Pfam | PF09850 | Type VI secretion system protein DotU | IPR017732 | Type IV / VI secretion system, DotU | 47 | 249 | 4.2E-68 |
| PANTHER | PTHR38033 | MEMBRANE PROTEIN-RELATED | - | - | 29 | 265 | 1.7E-50 |
| SUPERFAMILY | SSF103088 | OmpA-like | IPR036737 | OmpA-like domain superfamily | 308 | 423 | 1.83E-28 |
| CDD | cd07185 | OmpA_C-like | IPR006665 | OmpA-like domain | 319 | 423 | 2.54124E-33 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1 | 30 | - |
| Gene3D | G3DSA:1.25.40.590 | Type IV / VI secretion system, DotU | IPR038522 | Type IV / VI secretion system, DotU superfamily | 44 | 201 | 6.9E-49 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 392 | 411 | - |
| Pfam | PF00691 | OmpA family | IPR006665 | OmpA-like domain | 319 | 417 | 3.3E-15 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.