Pseudomonas fluorescens SBW25, PFLU6019
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF05591 | Type VI secretion system, VipA, VC_A0107 or Hcp2 | IPR008312 | Type VI secretion system sheath protein TssB1 | 11 | 161 | 4.2E-57 |
| TIGRFAM | TIGR03358 | VI_chp_5: type VI secretion protein, VC_A0107 family | IPR008312 | Type VI secretion system sheath protein TssB1 | 7 | 162 | 9.3E-56 |
| PANTHER | PTHR35850:SF1 | CYTOPLASMIC PROTEIN-RELATED | - | - | 2 | 165 | 1.5E-82 |
| PIRSF | PIRSF028301 | UCP028301 | IPR008312 | Type VI secretion system sheath protein TssB1 | 1 | 168 | 1.3E-58 |
| PANTHER | PTHR35850 | CYTOPLASMIC PROTEIN-RELATED | IPR008312 | Type VI secretion system sheath protein TssB1 | 2 | 165 | 1.5E-82 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.