Pseudomonas fluorescens SBW25, PFLU6019

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR03358 JCVI: type VI secretion system contractile sheath small subunit IPR008312 Type VI secretion system sheath protein TssB1 7 162 3.2E-55
Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IPR008312 Type VI secretion system sheath protein TssB1 11 161 4.2E-57
PIRSF PIRSF028301 UCP028301 IPR008312 Type VI secretion system sheath protein TssB1 1 168 1.3E-58
PANTHER PTHR35850 CYTOPLASMIC PROTEIN-RELATED IPR008312 Type VI secretion system sheath protein TssB1 1 164 2.0E-68

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.