Pseudomonas fluorescens SBW25, PFLU6025 (clpB2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07724
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07724
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 570 787 1.5E-66
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 695 713 4.4E-30
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 229 374 2.4E-10
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 621 639 4.4E-30
Coils Coil Coil - - 443 463 -
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 13 873 0.0
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 12 131 2.55E-18
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 616 782 9.1E-39
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 234 367 5.0E-9
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 617 776 3.1E-8
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 789 881 1.9E-11
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 373 465 2.9E-28
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 18 868 0.0
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 570 787 1.0E-78
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 789 863 1.5E-13
Gene3D G3DSA:1.10.8.60 - - - 789 885 1.1E-8
CDD cd00009 AAA - - 212 367 4.77374E-15
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 515 4.12E-71
Coils Coil Coil - - 886 887 -
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 375 564 5.8E-50
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 181 373 8.8E-83
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 666 684 4.4E-30
Coils Coil Coil - - 523 543 -
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 728 742 4.4E-30
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 1 161 6.2E-41
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 566 863 6.61E-63
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 182 373 1.7E-71
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 579 787 4.75696E-91

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.