Pseudomonas fluorescens SBW25, PFLU6036 (ubiA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004659 prenyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01635
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00860 Porphyrin and chlorophyll metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0
KEGG (InterPro) 00361 Chlorocyclohexane and chlorobenzene degradation InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0
KEGG (InterPro) 00130 Ubiquinone and other terpenoid-quinone biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0
KEGG (InterPro) 00380 Tryptophan metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0
UniPathway UPA00232 ubiquinone biosynthesis InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0
KEGG (InterPro) 00920 Sulfur metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0
KEGG (InterPro) 00270 Cysteine and methionine metabolism InterPro 5.8-49.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
0

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01474 JCVI: 4-hydroxybenzoate polyprenyltransferase IPR006370 4-hydroxybenzoate polyprenyltransferase-like 18 293 1.2E-101
Pfam PF01040 UbiA prenyltransferase family IPR000537 UbiA prenyltransferase family 34 278 3.2E-64
Gene3D G3DSA:1.20.120.1780 UbiA prenyltransferase - - 175 295 5.2E-33
Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. IPR006370 4-hydroxybenzoate polyprenyltransferase-like 12 294 28.362724
FunFam G3DSA:1.10.357.140:FF:000002 4-hydroxybenzoate octaprenyltransferase - - 29 174 8.1E-65
CDD cd13959 PT_UbiA_COQ2 IPR039653 Prenyltransferase 23 292 7.96305E-109
FunFam G3DSA:1.20.120.1780:FF:000001 4-hydroxybenzoate octaprenyltransferase - - 175 296 5.2E-41
PANTHER PTHR11048 PRENYLTRANSFERASES IPR039653 Prenyltransferase 11 294 4.5E-76
Gene3D G3DSA:1.10.357.140 UbiA prenyltransferase IPR044878 UbiA prenyltransferase superfamily 29 174 3.1E-38

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.