Pseudomonas putida F1, Pput_0622

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02311
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 178 259 21.899
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 211 254 -
Gene3D G3DSA:1.10.10.60 165 259 2.7E-20
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 33 119 6.8E-6
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 182 257 7.6E-21
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 176 258 2.2E-24
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 213 258 4.93E-7
SUPERFAMILY SSF51182 IPR011051 RmlC-like cupin domain superfamily 15 185 5.78E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.